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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11400053_11402242_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11400053 - 11402242
Intron Length:
2190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTAC
5'SS Class:
major
3'SS Sequence:
TTCTCTCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AGTTCTCAAACA
Flanking Amino Acid:
SSEPVLIHTTGTYFCLNEDT
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
63
38.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
84.6
0.78
0.7
80.4
24.9
Minor 5ss
36
-1.6
3.4
49.9
46.7
Minor BPS
50.8
0.02
2
67.19
39.1

Associated Gene:

Gene:
FSD2
Ensembl Gene ID:
ENSAPLG00000004759
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004914
11393669 - 11412848
19180