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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11402377_11403652_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11402377 - 11403652
Intron Length:
1276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTCAC
5'SS Class:
major
3'SS Sequence:
TTATTTTCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATCAT
U12 Branch Point Sequence:
TCTACCCTATCA
Flanking Amino Acid:
TDEENDDTITESIVGIPNCE
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1
62.1
38.7
Major BPS
75.9
0.64
1.1
77.7
35.2
Major PPT
84.8
0.78
0.7
81.1
30.8
Minor 5ss
30.3
-2.2
2.8
32.1
35.9
Minor BPS
52.3
0.07
2
68.93
43.1

Associated Gene:

Gene:
FSD2
Ensembl Gene ID:
ENSAPLG00000004759
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004914
11393669 - 11412848
19180