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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11403807_11405400_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11403807 - 11405400
Intron Length:
1594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGAG
5'SS Class:
major
3'SS Sequence:
GCCTACTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ATTTCTTAAATT
Flanking Amino Acid:
SNERHGDEQAAPSPPIIKSK
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.3
39.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
72.5
0.51
0.9
69.2
36.6
Minor 5ss
27.9
-2.5
3.5
36.8
47.7
Minor BPS
70.9
0.73
1.6
85.82
34.8

Associated Gene:

Gene:
FSD2
Ensembl Gene ID:
ENSAPLG00000004759
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004914
11393669 - 11412848
19180