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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1140471_1143305_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1140471 - 1143305
Intron Length:
2835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTAATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
ATTTCTGTAATG
Flanking Amino Acid:
SARAAGYDLYSAYDCVIPPM
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.9
33.4
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
75.7
0.58
1
70.5
39.1
Minor 5ss
25
-2.9
3.3
32.7
42.5
Minor BPS
59.4
0.16
2
69.15
39.1

Associated Gene:

Gene:
DUT
Ensembl Gene ID:
ENSAPLG00000007662
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007949
1140322 - 1151403
11082