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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11405557_11406638_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11405557 - 11406638
Intron Length:
1082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCTTC
5'SS Class:
major
3'SS Sequence:
TTTCTCTCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
CATTCAAAAACC
Flanking Amino Acid:
QLMNSINTIPAPCAPVINPQ
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
66.2
40.6
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
85.5
0.8
0.6
81.7
23.2
Minor 5ss
47.4
-0.3
3
68
43
Minor BPS
46.4
-0.2
2.2
61.82
43

Associated Gene:

Gene:
FSD2
Ensembl Gene ID:
ENSAPLG00000004759
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004914
11393669 - 11412848
19180