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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11409416_11410424_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11409416 - 11410424
Intron Length:
1009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
AAATGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
AAAACCCCAAAT
Flanking Amino Acid:
HLEEIFITVEENFGRQEQNF
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.6
37.2
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
68
0.4
1
59.3
41.8
Minor 5ss
32.4
-2
3.4
46.7
48.6
Minor BPS
44.8
-0.3
1.9
60.77
41.4

Associated Gene:

Gene:
FSD2
Ensembl Gene ID:
ENSAPLG00000004759
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004914
11393669 - 11412848
19180