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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11410521_11410601_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11410521 - 11410601
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGGAT
U12 Branch Point Sequence:
TATGCTGAGACT
Flanking Amino Acid:
QLSNAVESEKEEIHKNMCKL
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
71.4
0.53
1.4
71.4
45.1
Major PPT
75.9
0.58
1
73.9
36.8
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
44.4
-0.3
2.3
67.06
44.4

Associated Gene:

Gene:
FSD2
Ensembl Gene ID:
ENSAPLG00000004759
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004914
11393669 - 11412848
19180