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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11422152_11423121_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11422152 - 11423121
Intron Length:
970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
AATGCCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GGGTTTTTAAAA
Flanking Amino Acid:
QLDALRRQIKEKQDEVVYYD
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.1
0.43
0.9
59.2
42
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
58.4
0.26
1.4
61.57
38.4

Associated Gene:

Gene:
WHAMM
Ensembl Gene ID:
ENSAPLG00000004963
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005131
11415428 - 11429263
13836