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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11423310_11424735_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11423310 - 11424735
Intron Length:
1426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAATGCA
5'SS Class:
major
3'SS Sequence:
GCTGTTCTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
ACTTCATGGATT
Flanking Amino Acid:
ARRAYLRNKKDQCEAKHQQR
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
71.2
32.4
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
70.6
0.46
1
62.7
43.1
Minor 5ss
34
-1.8
3.2
41.2
39.4
Minor BPS
51.9
0.14
1.8
71.2
39.8

Associated Gene:

Gene:
WHAMM
Ensembl Gene ID:
ENSAPLG00000004963
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005131
11415428 - 11429263
13836