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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11424823_11424906_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11424823 - 11424906
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TGTTTTAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTGTTTTAATG
Flanking Amino Acid:
RFLQHHSIQIKRDKQKEEEK
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
0.9
76
32.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.5
0.66
1
74.8
38.9
Minor 5ss
34.8
-1.7
2.8
45.5
37.1
Minor BPS
61.5
0.22
1.4
62.87
40.1

Associated Gene:

Gene:
WHAMM
Ensembl Gene ID:
ENSAPLG00000004963
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005131
11415428 - 11429263
13836