About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11425003_11425354_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11425003 - 11425354
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACCAT
U12 Branch Point Sequence:
TTTGCTTTACCA
Flanking Amino Acid:
TLERLKTFREKCPAHVVLKT
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.8
1.15
0.6
96.1
12.1
Major BPS
65.6
0.39
1.3
75.1
39.4
Major PPT
83.4
0.75
0.8
81.7
35.4
Minor 5ss
37.4
-1.4
2.8
50.6
45.9
Minor BPS
66.7
0.52
1.7
78.6
38.6

Associated Gene:

Gene:
WHAMM
Ensembl Gene ID:
ENSAPLG00000004963
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005131
11415428 - 11429263
13836