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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11425818_11428588_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11425818 - 11428588
Intron Length:
2771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTATCTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATTAT
U12 Branch Point Sequence:
ATAGACTTATCT
Flanking Amino Acid:
SSMRSINNCIGTMDEVLASL
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.8
38.5
Major BPS
69.6
0.49
1.2
60.1
46.3
Major PPT
82.1
0.72
0.9
76.9
37
Minor 5ss
35.1
-1.7
2.7
42.5
44.3
Minor BPS
52.8
0.17
1.9
72.43
44

Associated Gene:

Gene:
WHAMM
Ensembl Gene ID:
ENSAPLG00000004963
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005131
11415428 - 11429263
13836