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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1143398_1144465_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1143398 - 1144465
Intron Length:
1068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TATTGTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATACACTTAAAA
Flanking Amino Acid:
ALPSGCYGRVAPRSGLAAKH
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.4
1.09
0.7
87
30
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81.3
0.7
0.8
73.8
41.4
Minor 5ss
35.1
-1.7
2.7
41.5
45.1
Minor BPS
58.2
0.25
1.6
67.36
37.7

Associated Gene:

Gene:
DUT
Ensembl Gene ID:
ENSAPLG00000007662
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007949
1140322 - 1151403
11082