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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11445125_11446457_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11445125 - 11446457
Intron Length:
1333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTTT
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
TTCTCTATGATT
Flanking Amino Acid:
ECESVSQQLQDAENKNKDLE
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
73
38.7
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
79.4
0.66
1
83.6
31.9
Minor 5ss
40.9
-1
3.7
64.2
47.3
Minor BPS
61.7
0.45
1.6
79.48
37.1

Associated Gene:

Gene:
HOMER2
Ensembl Gene ID:
ENSAPLG00000005079
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005252
11444936 - 11477737
32802