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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11452369_11453886_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11452369 - 11453886
Intron Length:
1518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
CTATCCTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
GTGCACCTAATG
Flanking Amino Acid:
NDKLKIALAQSSSNVKKWET
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
79.1
30.7
Major BPS
76.8
0.67
1
66
40.9
Major PPT
77.2
0.61
0.8
69
36.7
Minor 5ss
35.8
-1.6
3.4
49.2
47.3
Minor BPS
46.4
-0.4
1.9
51.71
42.4

Associated Gene:

Gene:
HOMER2
Ensembl Gene ID:
ENSAPLG00000005079
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005252
11444936 - 11477737
32802