Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11454027_11455429_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11454027 - 11455429

Intron Length:

1403

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGTAAT

5'SS Class:

major

3'SS Sequence:

TGTTGTGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

CCCCTGTTAATC

Flanking Amino Acid:

KIETSSNHSQESGRETPSST

Intron Amino Acid Position:

132

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.4

0.67

1.1

80.8

32.8

Major BPS

84.4

0.85

34.5

Major PPT

76.2

0.59

69.6

41.6

Minor 5ss

39.8

-1.1

2.5

51.4

45.2

Minor BPS

45.9

-0.3

50.09

41.6

Associated Gene:

Gene:

HOMER2

Ensembl Gene ID:

ENSAPLG00000005079

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005252

11444936 - 11477737

32802