Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11455523_11461206_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11455523 - 11461206

Intron Length:

5684

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACGGGG

5'SS Class:

major

3'SS Sequence:

ATGCTTTTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATCATTTTAATA

Flanking Amino Acid:

GFPSEQQLTKFAEKFQEVKE

Intron Amino Acid Position:

101

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

1.2

58.7

46.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

81.6

0.71

0.9

73.3

41.4

Minor 5ss

34.2

-1.8

3.6

46.8

48.5

Minor BPS

62.2

0.38

1.2

65.4

35.5

Associated Gene:

Gene:

HOMER2

Ensembl Gene ID:

ENSAPLG00000005079

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005252

11444936 - 11477737

32802