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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11477544_11477724_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11477544 - 11477724
Intron Length:
181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGTGCATG
5'SS Class:
major
3'SS Sequence:
CCCTATTCCAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GACTCAT
U12 Branch Point Sequence:
CCCTCCCTATTC
Flanking Amino Acid:
MGKEKQPIFTTRAH
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1
64.2
41.7
Major BPS
69.4
0.48
1.2
71.6
36.4
Major PPT
51.5
0.03
1.6
59.7
35.3
Minor 5ss
45.3
-0.5
2.7
57
41.9
Minor BPS
46.9
-0.2
1.9
54.12
44.5

Associated Gene:

Gene:
HOMER2
Ensembl Gene ID:
ENSAPLG00000005079
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005252
11444936 - 11477737
32802