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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1149957_1150827_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1149957 - 1150827
Intron Length:
871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGTT
5'SS Class:
strong_major
3'SS Sequence:
AACTTTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
AATAATTTAACT
Flanking Amino Acid:
LFNFGKETFEVKKGDRIAQL
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
85.4
31.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
75.7
0.58
1
69.3
40.8
Minor 5ss
37.6
-1.4
3.6
57.9
46.7
Minor BPS
64.5
0.53
1.5
77.76
37.9

Associated Gene:

Gene:
DUT
Ensembl Gene ID:
ENSAPLG00000007662
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007949
1140322 - 1151403
11082