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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1150899_1151346_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1150899 - 1151346
Intron Length:
448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TGATGTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TCATCATTGATG
Flanking Amino Acid:
IFYPELEEVQALDDTERGEG
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.8
33.2
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
77.5
0.62
0.9
73.7
41.5
Minor 5ss
41.3
-1
2.8
49.5
41.2
Minor BPS
56.2
0.05
1.7
60.23
41.9

Associated Gene:

Gene:
DUT
Ensembl Gene ID:
ENSAPLG00000007662
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007949
1140322 - 1151403
11082