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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11516075_11517694_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11516075 - 11517694
Intron Length:
1620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACTGATG
5'SS Class:
major
3'SS Sequence:
CTTTTTATTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCTTTTTATT
Flanking Amino Acid:
NRSGGNQRRERFQDGRYFRG
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62
0.28
1.2
57.7
46.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.5
0.8
0.7
81.8
28.5
Minor 5ss
35.4
-1.7
3.5
48.8
47.1
Minor BPS
61.5
0.44
1.6
80.48
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021975
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019495
11515910 - 11518092
2183