Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11540320_11541360_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11540320 - 11541360

Intron Length:

1041

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGCGGC

5'SS Class:

major

3'SS Sequence:

ATATCTGTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

AACTCTTTAAAA

Flanking Amino Acid:

KPGARCSAVTDVTAEAVGVA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

1.1

58.1

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

71.1

0.48

62.7

43.4

Minor 5ss

29.8

-2.3

3.5

40.6

Minor BPS

66.3

0.51

1.4

68.19

37.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027363

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026343

11538044 - 11541484

3441