About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11542869_11543091_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11542869 - 11543091
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TGGTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTCAGT
Flanking Amino Acid:
VCYTACATLKGPDSHYGTKG
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
78.3
36.2
Major BPS
100
1.24
0.5
100
0
Major PPT
80
0.68
0.9
76.9
42.1
Minor 5ss
38.8
-1.3
3.1
50
40.3
Minor BPS
56.7
0.29
2.3
84.99
41.5

Associated Gene:

Gene:
BTBD1
Ensembl Gene ID:
ENSAPLG00000005398
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005622
11542077 - 11553388
11312