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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11546227_11546827_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11546227 - 11546827
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
GTTGTTTCAATT
Flanking Amino Acid:
WGYSGTSDRIRFTVNRRISI
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
75.1
40.7
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
72.8
0.51
1
66.9
43.8
Minor 5ss
42.8
-0.8
3.4
64.4
47
Minor BPS
55
0.23
1.6
71.95
39.8

Associated Gene:

Gene:
BTBD1
Ensembl Gene ID:
ENSAPLG00000005398
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005622
11542077 - 11553388
11312