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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11547021_11547290_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11547021 - 11547290
Intron Length:
270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAG
U12 Branch Point Sequence:
TTTCTTTTCATA
Flanking Amino Acid:
PLMTIEEFAAGPAQSGILSD
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
23.3
Major BPS
59
0.22
1.5
67.7
36.5
Major PPT
86.7
0.82
0.6
83.7
24.6
Minor 5ss
37.4
-1.4
2.9
50.4
46
Minor BPS
57
0.21
1.7
71.66
34.9

Associated Gene:

Gene:
BTBD1
Ensembl Gene ID:
ENSAPLG00000005398
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005622
11542077 - 11553388
11312