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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11547489_11548845_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11547489 - 11548845
Intron Length:
1357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TCACATAACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTCACATAACA
Flanking Amino Acid:
SAEGFTDIDIDTLCAVLERD
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
61.1
0.25
1
54.4
38.8
Minor 5ss
41.5
-0.9
2.7
53.7
43.5
Minor BPS
63.1
0.41
1.8
79.56
35.5

Associated Gene:

Gene:
BTBD1
Ensembl Gene ID:
ENSAPLG00000005398
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005622
11542077 - 11553388
11312