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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11548952_11549520_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11548952 - 11549520
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAACCAA
U12 Branch Point Sequence:
TACTCCTTTACT
Flanking Amino Acid:
ADNAFMLLTQARLFDEPQLA
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.6
32.8
Major BPS
49.4
-0
1.3
59.1
37.3
Major PPT
85.8
0.81
0.7
84.5
30.2
Minor 5ss
30.6
-2.2
3.4
39.4
46.5
Minor BPS
74.1
0.84
1.6
85.28
40.9

Associated Gene:

Gene:
BTBD1
Ensembl Gene ID:
ENSAPLG00000005398
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005622
11542077 - 11553388
11312