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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11549678_11553095_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11549678 - 11553095
Intron Length:
3418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TATTGATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATAT
Flanking Amino Acid:
MFLYSDEVQI
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71.3
32.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.7
0.58
0.9
66.9
43.8
Minor 5ss
30.9
-2.2
3.2
40.5
38.7
Minor BPS
57.2
0.3
1.9
82.2
38.8

Associated Gene:

Gene:
BTBD1
Ensembl Gene ID:
ENSAPLG00000005398
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005622
11542077 - 11553388
11312