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Intron Name: Anas_platyrhynchos_platyrhynchos_11_11565594_11566578_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11565594 - 11566578

Intron Length:

985

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAACTTG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCCTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATGTTTTTAATT

Flanking Amino Acid:

DGFMTHYLREGEPYLNTAYG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

72.1

40.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

89.2

0.88

0.6

Minor 5ss

46.8

-0.3

2.9

64.1

47.4

Minor BPS

73.6

0.82

1.1

81.25

Associated Gene:

Gene:

TM6SF1

Ensembl Gene ID:

ENSAPLG00000005660

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005863

11562299 - 11577155

14857