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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11566683_11567519_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11566683 - 11567519
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTCAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
YLLMVAAIAWEQSYRSIGLY
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
71.6
40.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
37.2
-1.5
3
46.8
42.6
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
TM6SF1
Ensembl Gene ID:
ENSAPLG00000005660
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005863
11562299 - 11577155
14857