Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11596189_11596840_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

11596189 - 11596840

Intron Length:

652

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGA|GTAAAGTTT

5'SS Class:

major

3'SS Sequence:

CCTTTGAAGATAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CATTAAA

U12 Branch Point Sequence:

AGCTCATTAAAA

Flanking Amino Acid:

GLWEIENNPGKSPPKDGEHL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.6

0.32

1.1

66.5

39.8

Major BPS

70.2

0.5

71.6

30.1

Major PPT

58.1

0.18

1.1

54.4

39.4

Minor 5ss

43.3

-0.7

3.5

60.4

45.5

Minor BPS

57.5

0.23

1.7

65.49

40.1

Associated Gene:

Gene:

HDGFL3

Ensembl Gene ID:

ENSAPLG00000005715

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023378

11596147 - 11622576

26430