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Intron Name: Anas_platyrhynchos_platyrhynchos_11_11622077_11622567_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

11622077 - 11622567

Intron Length:

491

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CGG|GCGGCGTGA

5'SS Class:

weak_major

3'SS Sequence:

CCGAGAATACAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCCCGAT

U12 Branch Point Sequence:

GCCCCGAGAATA

Flanking Amino Acid:

MERAGDLVFAKMK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

50.9

0.02

1.3

40.3

38.4

Major BPS

56.1

0.15

1.3

54.3

42.9

Major PPT

-0.2

1.1

35.4

38.2

Minor 5ss

-3

4.2

28.5

43.8

Minor BPS

-0.9

2.1

43.2

38.5

Associated Gene:

Gene:

HDGFL3

Ensembl Gene ID:

ENSAPLG00000005715

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023378

11596147 - 11622576

26430