About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11650828_11652953_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11650828 - 11652953
Intron Length:
2126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAC
U12 Branch Point Sequence:
TCTTGCTAAGCT
Flanking Amino Acid:
AAFPSRRSRDRHSSNLNLHH
Intron Amino Acid Position:
782

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
47.8
-0.1
1
53.1
30.9
Major PPT
86.6
0.82
0.7
85.5
29.2
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
49.4
0.03
2.3
75.34
47.4

Associated Gene:

Gene:
BNC1
Ensembl Gene ID:
ENSAPLG00000005793
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005984
11650146 - 11660931
10786