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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11654882_11656137_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11654882 - 11656137
Intron Length:
1256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGAAC
5'SS Class:
major
3'SS Sequence:
TTTTTTGCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACTCATTTAATA
Flanking Amino Acid:
QDYIRGYVLQDASGKVLDHW
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
67.6
37.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
86
0.81
0.7
85.6
29.2
Minor 5ss
38.7
-1.3
3.1
51.2
45.6
Minor BPS
57.8
0.24
1.5
63.94
36.5

Associated Gene:

Gene:
BNC1
Ensembl Gene ID:
ENSAPLG00000005793
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005984
11650146 - 11660931
10786