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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11656374_11656515_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11656374 - 11656515
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATATTT
5'SS Class:
major
3'SS Sequence:
ATTCTCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGTTTTATGATT
Flanking Amino Acid:
DQCRHGWVAHALSKLRIPNL
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
76.2
33.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.9
0.72
0.8
78.6
33.8
Minor 5ss
44.1
-0.6
3.2
62.4
43.3
Minor BPS
56.4
0.28
1.5
75.77
34.9

Associated Gene:

Gene:
BNC1
Ensembl Gene ID:
ENSAPLG00000005793
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005984
11650146 - 11660931
10786