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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11772217_11807940_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11772217 - 11807940
Intron Length:
35724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
LKKQFHKASQLFSEKISGAE
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
89.5
0.89
0.7
84
31
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
SH3GL3
Ensembl Gene ID:
ENSAPLG00000005948
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006202
11772172 - 11824395
52224