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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1179688_1180729_R

Intron Information:

Intron Rank:
63
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1179688 - 1180729
Intron Length:
1042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTATAATTAATT
Flanking Amino Acid:
CPPGYFRIGQGHCVSGVGLG
Intron Amino Acid Position:
2639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73
38.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82
0.72
0.7
80.4
24.9
Minor 5ss
30.4
-2.2
3.6
38
46.9
Minor BPS
58
0.33
1.8
75.18
41.4

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950