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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11809247_11810683_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11809247 - 11810683
Intron Length:
1437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTAG
5'SS Class:
major
3'SS Sequence:
ATGTTCTTATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATGTTCTTATTA
Flanking Amino Acid:
KSTEYLQPNPAYRAKLGMLN
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.6
41.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
71.9
0.49
0.9
71.6
38.8
Minor 5ss
34.7
-1.7
3.5
45.4
49.7
Minor BPS
61.9
0.37
1.6
68.88
38.2

Associated Gene:

Gene:
SH3GL3
Ensembl Gene ID:
ENSAPLG00000005948
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006202
11772172 - 11824395
52224