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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11810828_11811923_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11810828 - 11811923
Intron Length:
1096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTACCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TATTCTTTACCA
Flanking Amino Acid:
GRELGDDSMFGLALLDAGES
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.6
34.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
77.5
0.62
0.8
73.6
30
Minor 5ss
38.5
-1.3
2.9
46.1
43.6
Minor BPS
72.2
0.69
1.5
80.29
35.7

Associated Gene:

Gene:
SH3GL3
Ensembl Gene ID:
ENSAPLG00000005948
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006202
11772172 - 11824395
52224