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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11812058_11813465_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11812058 - 11813465
Intron Length:
1408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TCTGTCTTATTT
Flanking Amino Acid:
LQDKDLKEIGHHLKKLEGRR
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
74.7
0.56
0.9
73.9
35.8
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
58.9
0.36
1.7
74.56
43.3

Associated Gene:

Gene:
SH3GL3
Ensembl Gene ID:
ENSAPLG00000005948
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006202
11772172 - 11824395
52224