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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11816809_11818060_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11816809 - 11818060
Intron Length:
1252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
CTCTGTGTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAA
U12 Branch Point Sequence:
CTTCAAGTAAAT
Flanking Amino Acid:
LEDLQSKLQNRINVASSRPK
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
64.7
46.6
Major BPS
58.6
0.22
1.1
59.7
34.6
Major PPT
73
0.52
0.9
64.8
41.3
Minor 5ss
34.8
-1.7
3.4
48.4
47.2
Minor BPS
42.2
-0.5
2.4
65.15
44.5

Associated Gene:

Gene:
SH3GL3
Ensembl Gene ID:
ENSAPLG00000005948
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006202
11772172 - 11824395
52224