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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11818189_11824189_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11818189 - 11824189
Intron Length:
6001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
GTCACTGGGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTTTCTGTCACT
Flanking Amino Acid:
IAYSSSIKSSGSSVHMDQPC
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
54
0.09
1.2
49.4
43.7
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
52.6
0.16
2.4
80.14
42.2

Associated Gene:

Gene:
SH3GL3
Ensembl Gene ID:
ENSAPLG00000005948
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006202
11772172 - 11824395
52224