About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11828218_11830391_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
11828218 - 11830391
Intron Length:
2174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATCA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTTCATTAGCC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
27.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.5
0.89
0.7
85.1
29.5
Minor 5ss
32.8
-2
3
39.5
45.9
Minor BPS
63.7
0.41
1.9
76.92
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006348
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006610
11828063 - 11841495
13433