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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11830460_11830589_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11830460 - 11830589
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGCTGC
5'SS Class:
major
3'SS Sequence:
TTCTTGATGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TATTCTACAACT
Flanking Amino Acid:
TESETELSSHTKRRKKKCCL
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
66.1
40.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
74
0.54
1
73.7
40.6
Minor 5ss
46.6
-0.3
2.8
63.5
41.4
Minor BPS
61.4
0.44
1.8
82.78
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006348
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006610
11828063 - 11841495
13433