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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11831321_11832225_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11831321 - 11832225
Intron Length:
905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTATCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
AATTTCTTATCC
Flanking Amino Acid:
FVRLKNNSDEDQPLHGWVLK
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.8
0.65
0.8
72.8
31.8
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
67.1
0.52
1.5
73.71
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006348
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006610
11828063 - 11841495
13433