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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11833165_11833272_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11833165 - 11833272
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTATCT
5'SS Class:
major
3'SS Sequence:
CTCTCAATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTCTCTCAATT
Flanking Amino Acid:
TLQVNQYQSQNAALEKKIRE
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
68.1
37.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72.6
0.51
0.8
66.7
33
Minor 5ss
39.6
-1.2
3.3
58
46.1
Minor BPS
62.9
0.48
1.5
77.15
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006348
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006610
11828063 - 11841495
13433