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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11833399_11834408_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11833399 - 11834408
Intron Length:
1010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GACTTATCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TCATTACTAACA
Flanking Amino Acid:
EELERTFNAKVENAQLSAAR
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
84.6
33.2
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
64.7
0.33
0.9
58.2
37.2
Minor 5ss
41.9
-0.9
3.1
59.6
38.8
Minor BPS
50.6
0.01
1.9
65.87
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006348
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006610
11828063 - 11841495
13433