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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1183545_1184350_R

Intron Information:

Intron Rank:
61
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1183545 - 1184350
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTCACCTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TCTCCCATAATT
Flanking Amino Acid:
SLDQTGLSCEDVDECDGNHR
Intron Amino Acid Position:
2522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
75.6
0.58
0.8
73
31.7
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
67.3
0.62
1.6
82.51
38.8

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950