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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11835665_11836652_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11835665 - 11836652
Intron Length:
988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGACTT
5'SS Class:
major
3'SS Sequence:
CTTTCTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTGCTTATCC
Flanking Amino Acid:
LHELKDQIVTLKKSLEDAKK
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
68.8
41.9
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
84.5
0.78
0.7
77.4
31.3
Minor 5ss
40.8
-1
3.4
67.4
43
Minor BPS
66.6
0.5
2
82.19
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006348
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006610
11828063 - 11841495
13433