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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11836810_11841121_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11836810 - 11841121
Intron Length:
4312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGTGTC
5'SS Class:
major
3'SS Sequence:
CTTTCACTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
AAACCTTTCACT
Flanking Amino Acid:
IGQEHRQLHSRNSKKEADLN
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.3
74.2
36
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
83.8
0.76
0.8
77.7
29.8
Minor 5ss
31.3
-2.1
3.4
43.4
44.3
Minor BPS
54.8
0.23
1.7
70.1
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006348
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006610
11828063 - 11841495
13433